Daily Papers

Neural scaling laws are driving the machine learning community toward training ever-larger foundation models across domains, assuring high accuracy and transferable representations for extrapolative tasks. We test this promise in quantum chemistry by scaling model capacity and training data from quantum chemical calculations. As a generalization task, we evaluate the resulting models' predictions of the bond dissociation energy of neutral H_2, the simplest possible molecule. We find that, regardless of dataset size or model capacity, models trained only on stable structures fail dramatically to even qualitatively reproduce the H_2 energy curve. Only when compressed and stretched geometries are explicitly included in training do the predictions roughly resemble the correct shape. Nonetheless, the largest foundation models trained on the largest and most diverse datasets containing dissociating diatomics exhibit serious failures on simple diatomic molecules. Most strikingly, they cannot reproduce the trivial repulsive energy curve of two bare protons, revealing their failure to learn the basic Coulomb's law involved in electronic structure theory. These results suggest that scaling alone is insufficient for building reliable quantum chemical models.

Field evaporation from ionic or covalently bonded materials often leads to the emission of molecular ions. The metastability of these molecular ions, particularly under the influence of the intense electrostatic field (1010 Vm-1), makes them prone to dissociation with or without an exchange of energy amongst them. These processes can affect the analytical performance of atom probe tomography (APT). For instance, neutral species formed through dissociation may not be detected at all or with a time of flight no longer related to their mass, causing their loss from the analysis. Here, we evaluated the changes in the measured composition of FeO, Fe2O3 and Fe3O4 across a wide range of analysis conditions. Possible dissociation reactions are predicted by density-functional theory (DFT) calculations considering the spin states of the molecules. The energetically favoured reactions are traced on to the multi-hit ion correlation histograms, to confirm their existence within experiments, using an automated Python-based routine. The detected reactions are carefully analysed to reflect upon the influence of these neutrals from dissociation reactions on the performance of APT for analysing iron oxides.

The coupled cluster calculations with accounting for relativistic effects to study spectroscopic and chemical properties of element 120 (E120) are performed. Similar calculations for Ba are also done and they are in a good agreement with the experimental data. Dissociation energies of diatomic X-H and X-Au molecules, where X=E120, Ba, are calculated; for E120 they are found to be 1.5div2 times smaller than those for Ba.

While attaining external field control of bimolecular chemical reactions has long been a coveted goal of physics and chemistry, the role of hyperfine interactions and dc magnetic fields in achieving such control has remained elusive. We develop an extended coupled-channel statistical theory of barrierless atom-diatom chemical reactions, and apply it to elucidate the effects of magnetic fields and hyperfine interactions on the ultracold chemical reaction Li(^2S_{1/2}) + CaH(^2Σ^+) to LiH(^1Σ^+) + Ca(^1S_{0}) on a newly developed set of ab initio potential energy surfaces. We observe large field effects on the reaction cross sections, opening up the possibility of controlling ultracold barrierless chemical reactions by tuning selected hyperfine states of the reactants with an external magnetic field.

We present an escape rate theory for current-induced chemical reactions. We use Keldysh nonequilibrium Green's functions to derive a Langevin equation for the reaction coordinate. Due to the out of equilibrium electronic degrees of freedom, the friction, noise, and effective temperature in the Langevin equation depend locally on the reaction coordinate. As an example, we consider the dissociation of diatomic molecules induced by the electronic current from a scanning tunnelling microscope tip. In the resonant tunnelling regime, the molecular dissociation involves two processes which are intricately interconnected: a modification of the potential energy barrier and heating of the molecule. The decrease of the molecular barrier (i.e. the current induced catalytic reduction of the barrier) accompanied by the appearance of the effective, reaction-coordinate-dependent temperature is an alternative mechanism for current-induced chemical reactions, which is distinctly different from the usual paradigm of pumping vibrational degrees of freedom.

Drug-protein binding and dissociation dynamics are fundamental to understanding molecular interactions in biological systems. While many tools for drug-protein interaction studies have emerged, especially artificial intelligence (AI)-based generative models, predictive tools on binding/dissociation kinetics and dynamics are still limited. We propose a novel research paradigm that combines molecular dynamics (MD) simulations, enhanced sampling, and AI generative models to address this issue. We propose an enhanced sampling strategy to efficiently implement the drug-protein dissociation process in MD simulations and estimate the free energy surface (FES). We constructed a program pipeline of MD simulations based on this sampling strategy, thus generating a dataset including 26,612 drug-protein dissociation trajectories containing about 13 million frames. We named this dissociation dynamics dataset DD-13M and used it to train a deep equivariant generative model UnbindingFlow, which can generate collision-free dissociation trajectories. The DD-13M database and UnbindingFlow model represent a significant advancement in computational structural biology, and we anticipate its broad applicability in machine learning studies of drug-protein interactions. Our ongoing efforts focus on expanding this methodology to encompass a broader spectrum of drug-protein complexes and exploring novel applications in pathway prediction.

The binding energies of the five bound rotational levels J=0-4 in the highest vibrational level v=14 in the X^1Sigma_g^+ ground electronic state of H_2 were measured in a three-step ultraviolet-laser experiment. Two-photon UV-photolysis of H_2S produced population in these high-lying bound states, that were subsequently interrogated at high precision via Doppler-free spectroscopy of the F^1Sigma_g^+ - X^1Sigma_g^+ system. A third UV-laser was used for detection through auto-ionizing resonances. The experimentally determined binding energies were found to be in excellent agreement with calculations based on non-adiabatic perturbation theory, also including relativistic and quantum electrodynamical contributions. The s-wave scattering length of the H + H system is derived from the binding energy of the last bound J=0 level via a direct semi-empirical approach, yielding a value of a_s = 0.2724(5) a_0, in good agreement with a result from a previously followed theoretical approach. The subtle effect of the malpha^4 relativity contribution to a_s was found to be significant. In a similar manner a value for the p-wave scattering volume is determined via the J=1 binding energy yielding a_p = -134.0000(6) a_0^3. The binding energy of the last bound state in H_2, the (v=14, J=4) level, is determined at 0.023(4) cm^{-1}, in good agreement with calculation. The effect of the hyperfine substructure caused by the two hydrogen atoms at large internuclear separation, giving rise to three distinct dissociation limits, is discussed.

Isotopic substitution in molecular systems can affect fundamental molecular properties including the energy position and spacing of electronic, vibrational and rotational levels, thus modifying the dynamics associated to their coherent superposition. In extreme ultraviolet spectroscopy, the photoelectron leaving the molecule after the absorption of a single photon can trigger an ultrafast nuclear motion in the cation, which can lead, eventually, to molecular fragmentation. This dynamics depends on the mass of the constituents of the cation, thus showing, in general, a significant isotopic dependence. In time-resolved attosecond photoelectron interferometry, the absorption of the extreme ultraviolet photon is accompanied by the exchange of an additional quantum of energy (typically in the infrared spectral range) with the photoelectron-photoion system, offering the opportunity to investigate in time the influence of isotopic substitution on the characteristics of the photoionisation dynamics. Here we show that attosecond photoelectron interferometry is sensitive to isotopic substitution by investigating the two-color photoionisation spectra measured in a mixture of methane (CH_4) and deuteromethane (CD_4). The isotopic dependence manifests itself in the modification of the amplitude and contrast of the oscillations of the photoelectron peaks generated in the two-color field with the two isotopologues. The observed effects are interpreted considering the differences in the time evolution of the nuclear autocorrelation functions in the two molecules.

Density functional theory (DFT) stands as a cornerstone method in computational quantum chemistry and materials science due to its remarkable versatility and scalability. Yet, it suffers from limitations in accuracy, particularly when dealing with strongly correlated systems. To address these shortcomings, recent work has begun to explore how machine learning can expand the capabilities of DFT; an endeavor with many open questions and technical challenges. In this work, we present Grad DFT: a fully differentiable JAX-based DFT library, enabling quick prototyping and experimentation with machine learning-enhanced exchange-correlation energy functionals. Grad DFT employs a pioneering parametrization of exchange-correlation functionals constructed using a weighted sum of energy densities, where the weights are determined using neural networks. Moreover, Grad DFT encompasses a comprehensive suite of auxiliary functions, notably featuring a just-in-time compilable and fully differentiable self-consistent iterative procedure. To support training and benchmarking efforts, we additionally compile a curated dataset of experimental dissociation energies of dimers, half of which contain transition metal atoms characterized by strong electronic correlations. The software library is tested against experimental results to study the generalization capabilities of a neural functional across potential energy surfaces and atomic species, as well as the effect of training data noise on the resulting model accuracy.

The conservative species weighting scheme enables the direct simulation Monte Carlo (DSMC) method to resolve trace species such as electrons and ions in weakly ionized flows. The present study extends this scheme to reacting flows, utilizing a split-merge concept for particles with species-dependent weights. Reactive collisions between differently weighted species are processed according to their respective weights, introducing the production of an integer number of product particles and a probabilistic approach applied to both reactant and product particles to satisfy mass conservation. The extended scheme was validated in single-cell dissociation and exchange reaction test cases, verifying mass and total energy conservation and the mole-fraction histories against conventional DSMC. This extension provides the electron number density required for predicting the onset of communication blackout at high altitudes during hypersonic reentry. The method was applied to the Orbital Re-entry Experiment (OREX) flight conditions from 105.0 km to 92.8 km altitude. Translational and internal temperatures showed good agreement with conventional DSMC results, validating the macroscopic flow-field computation. The scheme enabled continuous spatial distributions of trace electron number density, consistent with the communication blackout onset observed in the flight data. The computed ion current reproduced the overall trend of the in-flight electrostatic probe data. The influences of the ion recombination at the vehicle surface and of the uncertainty of the N + O associative-ionization rate were quantified, and the range of the computed currents encompassed the available measurements. The 105.0 km case extended the prediction beyond available measurements, consistent with the overall trend.

The origin of a chemical reaction between two reactant atoms is associated to the activation energy, with the assumption that, high-energy collisions between these atoms, are the ones that overcome the activation energy. Here, we (i) show that a stronger attractive van der Waals (vdW) and electron-ion Coulomb interactions between two polarized atoms are responsible to initiate a chemical reaction, either before or after the collision. We derive this stronger vdW attraction formula exactly using the quasi one-dimensional Drude model within the ionization energy theory and the energy-level spacing renormalization group method. Along the way, we (ii) expose the precise physical mechanism responsible for the existence of a stronger vdW interaction for both long and short distances, and also show how to technically avoid the electron-electron Coulomb repulsion between polarized electrons from these two reactant atoms. Finally, we properly and correctly associate the existence of this stronger attraction to Ramachandran's 'normal limits' (distance shorter than what is allowed by the standard vdW bond) between chemically nonbonded atoms.

In a polar material, a neutral exciton couples to phonons through the sum of the electron and hole deformation potentials. Because the total source vanishes by charge neutrality, the elastic exciton-phonon vertex is regularized by electron-hole interference. Here we determine the non-perturbative fate of this interference by exact diagonalization of a Holstein-exciton model. By parameterizing the mass asymmetry to decouple it from the small-polaron atomic limit, we map a regime map comprising an internal dressing crossover and a dissociation boundary. We prove analytically and verify numerically that for equal masses, the symmetric exciton ground state is protected from phonon dressing by an exact exchange selection rule, provided the phonon source is odd under electron-hole exchange (the neutral case). As mass asymmetry increases, this selection rule is broken and the exciton acquires a strong local polaronic cloud. We show that the dissociation boundary, conversely, is set by a global energy balance between Coulomb binding and polaronic stabilization, and is nearly independent of the internal dressing. Paradoxically, the very symmetry that protects the exciton from dressing denies it polaronic stabilization, driving it toward dissociation at strong coupling. We discuss these results in the context of lattice exciton-polaron models and their implications for sharp versus broad excitonic lines in mass-symmetric versus mass-asymmetric polar semiconductors.

Altering chemical reactivity and material structure in confined optical environments is on the rise, and yet, a conclusive understanding of the microscopic mechanisms remains elusive. This originates mostly from the fact that accurately predicting vibrational and reactive dynamics for soluted ensembles of realistic molecules is no small endeavor, and adding (collective) strong light-matter interaction does not simplify matters. Here, we establish a framework based on a combination of machine learning (ML) models, trained using density-functional theory calculations, and molecular dynamics to accelerate such simulations. We then apply this approach to evaluate strong coupling, changes in reaction rate constant, and their influence on enthalpy and entropy for the deprotection reaction of 1-phenyl-2-trimethylsilylacetylene, which has been studied previously both experimentally and using ab initio simulations. While we find qualitative agreement with critical experimental observations, especially with regard to the changes in kinetics, we also find differences in comparison with previous theoretical predictions. The features for which the ML-accelerated and ab initio simulations agree show the experimentally estimated kinetic behavior. Conflicting features indicate that a contribution of dynamic electronic polarization to the reaction process is more relevant then currently believed. Our work demonstrates the practical use of ML for polaritonic chemistry, discusses limitations of common approximations and paves the way for a more holistic description of polaritonic chemistry.

Laser-cooled ions confined in electromagnetic traps provide a unique, tunable mesoscopic system where the interplay of the trapping potential, nonlinear Coulomb interactions, and laser-ion scattering generates rich, collective dynamics. In this work, we engineer thermally activated switching between two oppositely oriented, square-pyramidal configurations of five laser-cooled ions in a Paul trap. For identical ions (^{40}Ca^{+}), the inversions proceed via a Berry pseudo-rotation mechanism with a low activation barrier, enabled by the permutation symmetry, in contrast to the umbrella inversion observed in ammonia. The experimentally measured inversion rates, spanning two orders of magnitude, are accurately captured by the multidimensional Kramers-Langer theory, enabling thermometry of the Doppler-cooled ion cluster at 1.8 pm 0.1 mK. By substituting the apex ion with a heavier isotope (^{44}Ca^{+}), we break the permutation symmetry and observe a suppression of thermally activated inversions. Numerical analysis reveals that this symmetry breaking closes the low-barrier channel, forcing the system to invert through a high-barrier turnstile rotation. Thus, we demonstrate a structural analogue of molecular kinetic isotope effects, establishing trapped ions as a versatile platform to explore symmetry-controlled collective dynamics.

Astrochemical models of interstellar clouds, the sites of stars, and planet formation require information about spin-state chemistry to allow quantitative comparison with spectroscopic observations. In particular, it is important to know if full scrambling or H abstraction (also known as proton hopping) takes place in ion-neutral reactions. The reaction of Cl+ and HCl+ with H2 and isotopologues has been studied at cryogenic temperatures between 20 and 180 K using a 22 pole radio frequency ion trap. Isotopic exchange processes are used to probe the reaction mechanism of the HCl+ + H2 reaction. The results are compared with previous measurements and theoretical predictions. The rate coefficients for the Cl+ + H2 and HCl+ + H2 reactions are found to be constant in the range of temperatures studied, except for the DCl+ + D2 reaction, where a weak negative temperature dependence is observed, and reactions with D2 are found to be significantly slower than the Langevin rate. No isotopic exchange reactions are observed to occur for the H2Cl+ ion. The analysis of the products of the HCl+ + H2 isotopic system clearly indicates that the reaction proceeds via simple hydrogen atom abstraction.

In this paper, we develop and implement an efficient asymptotic-preserving (AP) scheme to solve the gas mixture of Boltzmann equations under the disparate mass scaling relevant to the so-called "epochal relaxation" phenomenon. The disparity in molecular masses, ranging across several orders of magnitude, leads to significant challenges in both the evaluation of collision operators and the designing of time-stepping schemes to capture the multi-scale nature of the dynamics. A direct implementation of the spectral method faces prohibitive computational costs as the mass ratio increases due to the need to resolve vastly different thermal velocities. Unlike [I. M. Gamba, S. Jin, and L. Liu, Commun. Math. Sci., 17 (2019), pp. 1257-1289], we propose an alternative approach based on proper truncation of asymptotic expansions of the collision operators, which significantly reduces the computational complexity and works well for small varepsilon. By incorporating the separation of three time scales in the model's relaxation process [P. Degond and B. Lucquin-Desreux, Math. Models Methods Appl. Sci., 6 (1996), pp. 405-436], we design an AP scheme that captures the specific dynamics of the disparate mass model while maintaining computational efficiency. Numerical experiments demonstrate the effectiveness of the proposed scheme in handling large mass ratios of heavy and light species, as well as capturing the epochal relaxation phenomenon.

We present a non-perturbative framework for the quantum treatment of vibrational excitation in molecular systems driven by electric fields with arbitrary time dependence. For harmonic potentials with linear dipole coupling, the field-induced dynamics is exactly described by a displaced coherent state, whose evolution is completely determined by a complex phase-space coordinate. Closed-form expressions for this coordinate reveal a clear distinction between resonant and non-resonant regimes. The resulting vibrational populations follow a Poisson distribution determined by a dimensionless time-dependent phase-space displacement, for both resonant and non-resonant driving. Resonant driving results in an enhanced phase-space displacement, whereas finite detuning between the driving and vibrational frequencies leads to an exponential suppression of the phase-space displacement and vibrational excitation. While the approach reduces to the standard time-dependent perturbation theory in the weak-field limit, it remains valid in the strong-field regime, where perturbative treatments fail. Our results provide a transparent phase-space picture of vibrational control and enable non-perturbative state preparation in ultrafast spectroscopy.

Identifying transition states (TSs) on potential energy surfaces is a central computational bottleneck in mechanistic studies of catalytic materials. A TS search is not a single calculation but a long-horizon, multi-step workflow of atomistic simulations with delayed, asynchronous feedback and heterogeneous failure modes that require a joint multimodal analysis of scalar convergence diagnostics and atomic geometries along the reaction path. To address this challenge, we propose TSAgent, an agentic workflow that automates TS search directly at the density functional theory (DFT) level of quantum chemical accuracy. TSAgent operates through a persistent plan-execute-analyze-replan loop, continuously adapting its strategy based on convergence diagnostics and geometric feedback without human intervention. We evaluate TSAgent on a diverse 100-example subset of the OC20NEB heterogeneous catalysis benchmark, where it successfully locates TSs with 83% accuracy. In a direct comparison against expert DFT practitioners on 10 held-out examples, TSAgent achieves a 70% success rate compared to a human-expert average of 73 +/- 12%. Finally, TSAgent independently reproduces Bronsted-Evans-Polanyi scaling relationships for NH3 dissociation on metal and single-atom alloy surfaces from a published heterogeneous catalysis study, demonstrating that its utility extends beyond curated benchmarks to real scientific investigations.

Accurate prediction of bond dissociation energies (BDEs) underpins mechanistic insight and the rational design of molecules and materials. We present a systematic, reproducible benchmark comparing quantum and classical machine learning models for BDE prediction using a chemically curated feature set encompassing atomic properties (atomic numbers, hybridization), bond characteristics (bond order, type), and local environmental descriptors. Our quantum framework, implemented in Qiskit Aer on six qubits, employs ZZFeatureMap encodings with variational ansatz (RealAmplitudes) across multiple architectures Variational Quantum Regressors (VQR), Quantum Support Vector Regressors (QSVR), Quantum Neural Networks (QNN), Quantum Convolutional Neural Networks (QCNN), and Quantum Random Forests (QRF). These are rigorously benchmarked against strong classical baselines, including Support Vector Regression (SVR), Random Forests (RF), and Multi-Layer Perceptrons (MLP). Comprehensive evaluation spanning absolute and relative error metrics, threshold accuracies, and error distributions shows that top-performing quantum models (QCNN, QRF) match the predictive accuracy and robustness of classical ensembles and deep networks, particularly within the chemically prevalent mid-range BDE regime. These findings establish a transparent baseline for quantum-enhanced molecular property prediction and outline a practical foundation for advancing quantum computational chemistry toward near chemical accuracy.

This report is a primarily survey on the chemical nature of some exotic species containing the positively charged muon and the muonic Helium, i.e., the negatively charged muon plus helium nucleus, as exotic isotopes of hydrogen, using the newly developed multi-component quantum theory of atoms in molecules (MC-QTAIM) analysis, employing ab initio non-Born-Oppenhiemer wavefunctions. Accordingly, the "atoms in molecules" analysis performed on various asymmetric exotic isotopomers of hydrogen molecule, recently detected experimentally [Science 331, 448 (2011)], demonstrates that both the exotic isotopes are capable of forming atoms in molecules and retaining the identity of hydrogen atom. Various derived properties of atomic basins containing muonic helium cast no doubt that apart from its short life time, it is a heavier isotope of hydrogen while the properties of basins containing the positively charged muon are more remote from those of the orthodox hydrogen basins, capable of appreciable donation of electrons as well as large charge polarization; however, with some tolerance, they may be categorized also as hydrogen basins though with a smaller electronegativity. All in all, present study also clearly demonstrates that the MC-QTAIM analysis is an efficient approach to decipher the chemical nature of species containing exotic constituents, hard to be elucidated by experimental and/or alternative theoretical schemes.

The independent atom ansatz of density functional theory yields an accurate analytical expression for dynamic correlation energy in the H_{2} molecule: E_{c} = 0.5(1 - 2)(ab|ba) for the atom-additive self-consistent density rho = |a|^{2} + |b|^{2}. Combined with exact atomic self-exchange, it recovers more than 99.5 % of nearly exact SCAN exchange-correlation energy at R > 0.5 A, differing by less than 0.12 eV. The total energy functional correctly dissociates the H-H bond and yields absolute errors of 0.002 A, 0.19 eV, and 13 cm^{-1} relative to experiment at the tight binding computational cost. The chemical bond formation is attributed to the asymptotic Heitler-London resonance of quasi-orthogonal atomic states (- (ab|ba)) with no contributions from kinetic energy or charge accumulation in the bond.

Two-photon resonance transition technology has been proven to have a wide range of applications,it's limited by the available wavelength of commercial lasers.The application of optical comb technology with direct two-photon transition (DTPT) will not be restricted by cw lasers.This article will further theoretically analyze the dynamics effects of the DTPT process driven by optical frequency combs. In a three-level atomic system, the population of particles and the amount of momentum transfer on atoms are increased compared to that of the DTPT-free process. The 17% of population increasement in 6-level system of cesium atoms has verified that DTPT process has a robust enhancement on the effect of momentum transfer. It can be used to excite the DTPTs of rubidium and cesium simultaneously with the same mode-locked laser. And this technology has potential applications in cooling different atoms to obtain polar cold molecules, as well as high-precision spectroscopy measurement.

Open quantum systems lose energy and phase coherence through different dissipative processes, but these processes can produce overlapping dynamical signatures. The Liouvillian spectrum summarizes how such a system relaxes, yet it is not obvious how much of that spectrum is needed to distinguish the underlying dissipation rates. We study this question for amplitude damping and dephasing in a six-qubit Lindblad model whose spectrum can be derived analytically. We retain only the slowest non-steady spectral modes and ask how many are required before each dissipative rate becomes recoverable. We show that population modes contain no dephasing information, which creates a lower bound of D = 2^n retained modes for uniform dephasing identifiability in the relevant rate regime. The measured recovery threshold reaches this bound at n = 4,5,6, while n = 3 remains above it. At n = 6, least squares achieves a mean joint absolute error of order 10^-9, compared with 4.355 x 10^-4 for four tabular learning methods. Robustness tests show that this advantage weakens when the spectra are perturbed and when a transverse field breaks the commuting structure. These results show that the amount and structure of retained spectral information can determine whether dissipative parameters are recoverable, independently of the estimator used. The present conclusions apply to noise-free simulator spectra rather than measurement-derived spectra.

We provide a theoretical analysis for a recently demonstrated cooling method. Two-level particles undergo successive adiabatic transfers upon interaction with counter-propagating laser beams that are repeatedly swept over the transition frequency. We show that particles with narrow linewidth transitions can be cooled to near the recoil limit. This cooling mechanism has a reduced reliance on spontaneous emission compared to Doppler cooling, and hence shows promise for application to systems lacking closed cycling transitions, such as molecules.

Predicting chemical reactions in biomolecules is challenging because reactive centers are embedded within complex environments that strongly influence their energetics and mechanisms. Here, we present a hybrid quantum-classical workflow that combines molecular dynamics, density functional theory, and correlated wavefunction methods, tightly integrating CPUs, GPUs, and quantum processing units (QPUs) to enable simulations across multiple length and accuracy scales. We apply this approach to ADGRG1 autoproteolysis, a maturation reaction in an adhesion G protein-coupled receptor that has not previously been studied using correlated electronic-structure methods. Our simulations treat a biologically realistic system containing more than one million atoms, including the full-length uncleaved receptor embedded in an endoplasmic-reticulum membrane, while incorporating a 54-qubit IQM quantum processor and up to 1,200 NVIDIA H100 GPUs. These results demonstrate how quantum computers can serve as accelerators within scalable scientific workflows, extending correlated electronic-structure methods to biologically relevant systems.

We present a state-specific second-order perturbation theory based on a configuration interaction singles (CIS) reference and its generalized Fock operator. Starting from a fully internally contracted construction, we retain the complete doubles space and internally contracted triples in the first-order wave function. We consider two partitions, Canonical and Block-diagonal, with reference excitation energies given by the Fock excitation gap ω^{(0)} and the CIS excitation energy ω_{rm CIS}, respectively. Our analysis establishes that strict size-intensivity is preserved when the contracted-triples denominators use bare Fock gaps and the occupied--virtual Fock block is projected to remove residual spectator coupling. Based on this observation, combining Canonical triples with Block-diagonal doubles yields a size-intensive Hybrid partition. These properties are verified for water with non-interacting helium atoms. Our formulation enables O(o^3v^2) cost per matrix--vector product in a semicanonical basis. On the QUEST\#1 benchmark, Canonical and Block-diagonal show opposite systematic biases, whereas Hybrid gives the best overall accuracy among the three partitions. Its mean absolute errors for singlets and triplets are 0.24 and 0.15~eV, compared with 0.28 and 0.22~eV for CIS(D). The improvement is largest for Rydberg excitations, although CIS(D) remains more accurate for valence singlets.

Large-amplitude molecular motions which occur during isomerization can cause significant changes in electronic structure. These variations in electronic properties can be used to identify vibrationally-excited eigenstates which are localized along the potential energy surface. This work demonstrates that nuclear quadrupole hyperfine interactions can be used as a diagnostic marker of progress along the isomerization path in both the HC14N/H14NC and DC15N/D15NC chemical systems. Ab initio calculations at the CCSD(T)/cc-pCVQZ level indicate that the hyperfine interaction is extremely sensitive to the chemical bonding of the quadrupolar 14N nucleus and can therefore be used to determine in which potential well the vibrational wavefunction is localized. A natural bonding orbital analysis along the isomerization path further demonstrates that hyperfine interactions arise from the asphericity of the electron density at the quadrupolar nucleus. Using the CCSD(T) potential surface, the quadrupole coupling constants of highly-excited vibrational states are computed from a one-dimensional internal coordinate path Hamiltonian. The excellent agreement between ab initio calculations and recent measurements demonstrates that nuclear quadrupole hyperfine structure can be used as a diagnostic tool for characterizing localized HCN and HNC vibrational states.

In the photoreceptor compass model, a light-generated, spin-correlated radical pair undergoes singlet-triplet interconversion driven by Zeeman and anisotropic hyperfine interactions, leading to orientation-dependent reaction yields. In this study, we consider simultaneously the spin environment and the boson environment surrounding the radical-pair system and concentrate on the correlated memory effect of the spin bath. In the linear-response limit, the spin bath is mapped to an effective Gaussian environment. The system dynamics and yields under its influence together with the bosonic bath are propagated uniformly using the hierarchical equations of motion (HEOM) or equivalently the dissipaton equations of motion (DEOM) method. The HEOM/DEOM is non-Markovian and non-perturbative, exact for Gaussian environments. Corresponding results of the Markovian Lindblad master equation are also shown for comparison. Numerical demonstrations highlight the non-Markovian memory effect as a crucial ingredient for radical-pair magnetoreception.

Classical empirical force fields have dominated biomolecular simulation for over 50 years. Although widely used in drug discovery, crystal structure prediction, and biomolecular dynamics, they generally lack the accuracy and transferability required for first-principles predictive modeling. In this paper, we introduce MACE-OFF, a series of short range transferable force fields for organic molecules created using state-of-the-art machine learning technology and first-principles reference data computed with a high level of quantum mechanical theory. MACE-OFF demonstrates the remarkable capabilities of short range models by accurately predicting a wide variety of gas and condensed phase properties of molecular systems. It produces accurate, easy-to-converge dihedral torsion scans of unseen molecules, as well as reliable descriptions of molecular crystals and liquids, including quantum nuclear effects. We further demonstrate the capabilities of MACE-OFF by determining free energy surfaces in explicit solvent, as well as the folding dynamics of peptides.Finally, we simulate a fully solvated small protein, observing accurate secondary structure and vibrational spectrum. These developments enable first-principles simulations of molecular systems for the broader chemistry community at high accuracy and relatively low computational cost.

To meet the challenges of high-resolution molecular spectroscopy, increasingly sophisticated spectroscopic techniques were developed. For a long time FTIR and laser-based spectroscopies were used for these studies. The recent development of dual-comb spectroscopy at high-resolution makes this technique a powerful tool for gas phase studies. We report on the use and characterization of the IRis-F1, a tabletop mid-infrared dual-comb spectrometer, in the newly developed step-sweep mode. The resolution of the wavenumber axis is increased by step-wise tuning (interleaving) and accurate measurement of the laser center wavelength and repetition frequency. Doppler limited measurements of N2O and CH4 reveal a wavenumber accuracy of 1E-4 cm-1 on the covered range of > 50 cm-1. Measured half-widths of absorption lines show no systematic broadening, indicating a negligible instrument response function. Finally, measurements of nitrogen pressure broadening coefficients in the v4 band of methane show that quantum cascade laser dual-comb spectroscopy in step-sweep mode is well adapted for measurements of precision spectroscopic data, in particular line shape parameters.

C_{11}H_9^+ ion is the dominant fragment cation formed from methyl-naphthalene (MeNp) and dimethyl-naphthalene (diMeNp). Using the multiplex capabilities of PIRENEA, a setup dedicated to laboratory astrophysics, we studied the reactivity of the benzylium-like isomers of C_{11}H_9^+ with diMeNp under isolated conditions relevant to radiative association. Two reaction products are observed, C_{12}H_{11}^+ -- also formed in the reaction with MeNp -- and C_{13}H_{13}^+, with branching ratios that depend on the specific diMeNp isomer. The reaction products were subsequently exposed to UV-visible irradiation to gain insight into their structures. The acenaphthylene radical cation, C_{12}H_{8}^{bullet +}, was identified as the most stable photofragment. We show that this experimental approach, supported by density functional theory calculations and molecular dynamics simulations, provides new constraints on the chemistry of benzylium-type species. We highlight the role that long-lived ion-molecule complexes can have in promoting C-C coupling and the formation of a pentagonal cycle. Moreover, the chemistry uncovered here highlights new pathways for the formation of pentagonal rings during PAH growth under low-pressure and cold conditions. In particular, it can lead to efficient formation of acenaphthylene-like species, recently detected in the TMC-1 cold cloud.

Machine-learned interatomic potentials distilled from foundation models enable fast large-scale molecular dynamics (MD), but they can fail locally in chemical environments that their training data did not sample. System-averaged error metrics and small random audits often miss such sparse or isolated failures. Here we use an exact equivariant foundation model, MACE-MPA-0, to check every atom of million-atom production simulations. Reorganizing two-layer MACE inference into a receiver-chunked three-pass schedule that keeps no per-edge intermediates resident reduces the marginal memory per atom 340-fold, evaluates up to 2.86times10^{7} atoms on a single H200 GPU, and supervises 10^{6}-atom trajectories in LAMMPS at 1.3% of the run time. Distilled MACE students run four to nine times slower than NEP89 with 0.95-1.28 times the teacher's force error against density functional theory (DFT). In molten SiO_2, whole-system checks uncover a persistent tail of under-coordinated atoms hidden by the system-averaged error and an isolated, unphysical O-O contact that a 1% random audit misses 94% of the time. On-the-fly retraining on teacher-labelled 13-Å clusters, with the force loss restricted to their inner 6 Å, removes three quarters of the failure tail and the kilobar-level pressure biases in SiO_2 and compressed water; the repair converges to the teacher, not to DFT.

The interstellar medium (ISM) is all but empty. To date, more than 300 molecules have already been discovered. Because of the extremely low temperature, the gas-phase chemistry is dominated by barrierless exothermic reactions of radicals and ions. However, several abundant molecules and organic molecules cannot be produced efficiently by gas-phase reactions. To explain the existence of such molecules in the ISM, gas-surface interactions between small molecules and dust particles covered with amorphous solid water (ASW) mantles must be considered. In general, surface processes such as adsorption, diffusion, desorption, and chemical reactions can be linked to the binding energy of molecules to the surface. Hence, a lot of studies have been performed to identify the binding energies of interstellar molecules on ASW surfaces. Cosmic radiation and free electrons may induce a negative charge on the dust particles, and the binding energies may be affected by this charge. In this study, we calculate the binding energies of CO, CH4, and NH3, on neutral and charged ASW surfaces using DFT calculations. Our results indicate that CO can interact with the surface charge, increasing its binding energy. In contrast, the binding energy of CH4 remains unchanged in the presence of surface charge, and that of NH3 typically decreases.

We investigate the scattering halos resulting from collisions between discrete momentum components in the time-of-flight expansion of interaction-tunable ^6rm Li_2 molecular Bose-Einstein condensates. A key highlight of this study is the observation of the influence of interactions on the collisional scattering process. We measure the production of scattering halos at different interaction levels by varying the number of particles and the scattering length, and quantitatively assess the applicability of perturbation theory. To delve into a general theory of scattering halos, we introduce a scattering factor and obtain a universal relation between it and the halo ratio. Furthermore, we simulate the formation of scattering halos under non-perturbative conditions and analyze the discrepancies between simulation results and experiments through a return pulse experiment. This study enhances our understanding of the physical mechanisms underlying scattering processes in many-body systems and provides new perspectives for further theoretical research.

Tunnelling reactions of molecules embedded on cryogenic noble-gas matrices are being used in fundamental studies of how reactivity varies with the nature of the supposedly inert matrix as well as pointers to the chemistry occurring in the interstellar medium on ice-grains. To these ends we present chemical kinetic rate constants for the cis to trans isomerisation of seleno-, thio- and monomeric formic acids and that of their three dimeric species, based on multidimensional calculations in the gas-phase, from 10~K to 300~K as a guide to the matrix reactions.

Elucidating molecular structures from spectra is a foundational problem in chemical and materials characterization, yet remains challenging due to spectral ambiguity and the vast molecular space. Although recent diffusion-based generators show strong promise for spectra-conditioned elucidation, existing methods struggle to learn robust spectra-structure relationships from limited paired data when relying solely on global spectral representation. Moreover, the repeated full sampling inference strategy incurs substantial computation overhead. To address these limitations, we propose MAST, a Motif-Augmented diffusion framework with Search Tree, for joint 2D-3D spectroscopic molecular structure elucidation. MAST introduces explicit, interpretable motif priors as intermediate evidences throughout denoising, reducing conditional ambiguity and facilitating spectra-conditioned optimization. We further cast diffusion sampling as reward-guided tree search to prioritize high-reward denoising trajectories, yielding a compact set of spectra-consistent candidates under limited budgets. On the QM9S multi-spectra benchmark, MAST achieves 94.89\% exact recovery and improves 3D fidelity, while preserving high chemical validity and stability. Code is available at https://github.com/Jia040223/MAST.

Synthetic data generation has become a cornerstone for advancing large language models. However, the lack of the quantitative analysis for error tolerance became a critical bottleneck. Consequently, current filtering strategies fluctuate between two extremes: they are either overly aggressive, risking the exclusion of potentially valuable samples, or overly permissive, failing to eliminate erroneous samples effectively. To bridge this gap, this paper introduces Atomic Tree Operation Modeling (ATOM), a framework that decomposes data into functional units (f(x)rightarrow y). ATOM distinguishes benign Operand x perturbations from fatal Operator f perturbations. The former are needlessly discarded by aggressive filtering, while the latter slip through permissive filtering. Our experiments reveal a double dissociation: models are robust to operand perturbations but collapse under operator perturbations. By prioritizing operator over aggressive operand precision, our ATOM-synthesized data outperforms rigorous baselines (e.g., +3.1% gain over LIMA), suggesting that operator diversity matters more than operand precision. Our code is available at https://github.com/Lut-hub/ATOM.

The development of advanced diagnostic systems to measure and optimize emerging energetic material performance is critical for the defeat of Chemical Warfare Agents (CWA). This study presents an integrated multi-spectroscopic approach to monitor the interaction between a CWA simulant, Diisopropyl Methyl Phosphonate (DIMP), and combusting composite metal particles. A custom benchtop Polygonal Rotating Mirror Infrared Spectrometer (PRiMIRS), equipped with a customizable experimental chamber, is employed to observe DIMP decomposition. Tunable Diode Laser Absorption Spectroscopy (TDLAS) is used to measure path-averaged gas temperature profiles during combustion. In the experiment, the chamber is preheated to evaporate liquid DIMP. Various composite metal powders (Al-8Mg):3Zr, (Al-8Mg):Zr, 2(Al-8Mg):Zr, and 4(Al-8Mg):Zr are placed on a stainless steel mount and ignited using 3Al-2Ni sputter-deposited nanolayered foils. The combusting metal particles mix with the DIMP vapor, initiating chemical and thermal interactions. PRiMIRS captures DIMP spectral evolution, while TDLAS simultaneously monitors gas temperature. A spectral defeat parameter was developed to enable quantitative real-time assessment of the DIMP destruction. It uses infrared light absorption by both from DIMP and its immediate decomposition products Isopropyl Methyl Phosphonate (IMP) and Isopropyl Alcohol (IPA). Fourier Transform Infrared Spectroscopy (FTIR) serves as a secondary verification tool quantifying the decomposition products over extended timeframes, and Transmission Electron Microscopy (TEM) confirms the expected metal oxide dispersion within the reaction space. This study reports variability in DIMP defeat as a function of metal powder stoichiometry, metal powder loading, and path-averaged gas temperature profiles, offering critical insights into optimizing reactive materials for effective CWA neutralization.

Central to our understanding of chemical reactivity is the principle of mass conservation, which is fundamental for ensuring physical consistency, balancing equations, and guiding reaction design. However, data-driven computational models for tasks such as reaction product prediction rarely abide by this most basic constraint. In this work, we recast the problem of reaction prediction as a problem of electron redistribution using the modern deep generative framework of flow matching. Our model, FlowER, overcomes limitations inherent in previous approaches by enforcing exact mass conservation, thereby resolving hallucinatory failure modes, recovering mechanistic reaction sequences for unseen substrate scaffolds, and generalizing effectively to out-of-domain reaction classes with extremely data-efficient fine-tuning. FlowER additionally enables estimation of thermodynamic or kinetic feasibility and manifests a degree of chemical intuition in reaction prediction tasks. This inherently interpretable framework represents a significant step in bridging the gap between predictive accuracy and mechanistic understanding in data-driven reaction outcome prediction.

Motivated by the recent HAL QCD lattice results on the D - D^* potential at nearly physical point m_π=146.4 MeV, we theoretically examine effects from the two-pion exchange in (semi-)long-range parts of the DD^* system. We employ the framework of heavy-meson chiral perturbation theory with heavy-quark spin symmetry. The pion exchanges up to next-to-next-to-leading order (N^2LO) are taken into account. In order to separate the (semi-)long-range contributions, we apply the dispersion-relation method to one-loop diagrams. As a result, we find that the lattice data on the D - D^* potential in the regime of 0.5, {rm fm} lesssim r is reproduced by adjusting the unknown O(p^2) couplings. In particular, it turns out that contributions from isospin-independent N^2LO triangle diagrams play a central role in reproducing the lattice data of the form V^{DD^*}sim left({rm e}^{-m_πr}/rright)^2 in 1.0, {rm fm} lesssim rlesssim 2.0, {rm fm}. We also present predictions of other D^{(*)} - D^{(*)} potentials, where the similar two-pion exchange tail is predicted. Our findings provide useful information on the (semi-)long-range regime of the D - D^* potential focusing on two-pion exchanges.

All-atom generative modeling of 3D biomolecular complexes has emerged as the dominant paradigm for predicting the structure of proteins and protein-ligand systems. Generating structures at the atomic level of fidelity, however, typically requires expensive iterative diffusion rollouts, making both conventional deployment and inference-time search techniques computationally costly. In this paper, we introduce the Denoiser Cofolding All-Atom Flowmap (DeCAF) framework for distilling state-of-the-art all-atom cofolding models into all-atom flow maps that produce high-quality samples in only a few inference steps. We build DeCAF on a denoiser-based formulation of flow maps with endpoint losses that naturally support SE(3) rigid alignment, which we show is critical for training accurate models. We further derive a simple change of variables that lets DeCAF operate in the σ-space noise schedule of EDM-style architectures, enabling direct distillation from pretrained cofolding diffusion models. Equipped with DeCAF's flowmap lookahead, we introduce a purpose-built inference-time framework that improves sampling through reward-guided search. Empirically, DeCAF-Boltz statistically improves over Boltz-1x in both accuracy (RMSD) and physical validity scores of protein-ligand poses at strict NFE budgets on the challenging Runs N' Poses, while also showing a more optimal Pareto frontier across all inference compute budgets on PoseBusters. Distilling the state-of-the-art Pearl cofolding model, DeCAF-Pearl outperforms diffusion-based cofolding models and matches its teacher on success rate while using 5x fewer NFEs. We release our code at https://github.com/genesistherapeutics/decaf.

As host to two accreting planets, PDS 70 provides a unique opportunity to probe the chemical complexity of atmosphere-forming material. We present ALMA Band 6 observations of the PDS~70 disk and report the first chemical inventory of the system. With a spatial resolution of 0.4''-0.5'' (sim50 au), 12 species are detected, including CO isotopologues and formaldehyde, small hydrocarbons, HCN and HCO+ isotopologues, and S-bearing molecules. SO and CH3OH are not detected. All lines show a large cavity at the center of the disk, indicative of the deep gap carved by the massive planets. The radial profiles of the line emission are compared to the (sub-)mm continuum and infrared scattered light intensity profiles. Different molecular transitions peak at different radii, revealing the complex interplay between density, temperature and chemistry in setting molecular abundances. Column densities and optical depth profiles are derived for all detected molecules, and upper limits obtained for the non detections. Excitation temperature is obtained for H2CO. Deuteration and nitrogen fractionation profiles from the hydro-cyanide lines show radially increasing fractionation levels. Comparison of the disk chemical inventory to grids of chemical models from the literature strongly suggests a disk molecular layer hosting a carbon to oxygen ratio C/O>1, thus providing for the first time compelling evidence of planets actively accreting high C/O ratio gas at present time.

We investigate the fate of quantum many-body scars in the PXP model subject to Markovian dissipation. We show that when local jump operators respect the same symmetries of the Hamiltonian the full Liouvillian spectrum displays a tower of states with properties analogous to standard quantum scars: large overlaps with Néel states and equally spaced gaps in the imaginary part of the eigenvalues, set by a single frequency. Whether the long-time dynamics is dominated by scars is determined by the real parts of the eigenvalues, which are set by the ratio between the two relaxation rates γ_{pm} describing spin flips down-to-up or up-to-down respectively. For asymmetric dissipation (γ_+ > γ_-) the scarred eigenvalues have the smallest real parts: the resulting enhanced fidelity oscillations are further stabilized by staggered jump operators. In contrast, replacing the full projection operator in the dissipators with a partial one breaks the symmetries of the problem and is seen to destroy dissipative scars altogether.

Electron-phonon interaction is of central importance for the electrical and heat transport properties of metals, and is directly responsible for charge-density-waves or (conventional) superconducting instabilities. The direct observation of phonon dispersion anomalies across electronic phase transitions can provide insightful information regarding the mechanisms underlying their formation. Here, we review the current status of phonon dispersion studies in superconductors under hydrostatic and uniaxial pressure. Advances in the instrumentation of high resolution inelastic X-ray scattering beamlines and pressure generating devices allow these measurements to be performed routinely at synchrotron beamlines worldwide.

Molecular structure elucidation from spectra is a foundational problem in chemistry, with profound implications for compound identification, synthesis, and drug development. Traditional methods rely heavily on expert interpretation and lack scalability. Pioneering machine learning methods have introduced retrieval-based strategies, but their reliance on finite libraries limits generalization to novel molecules. Generative models offer a promising alternative, yet most adopt autoregressive SMILES-based architectures that overlook 3D geometry and struggle to integrate diverse spectral modalities. In this work, we present DiffSpectra, a generative framework that directly infers both 2D and 3D molecular structures from multi-modal spectral data using diffusion models. DiffSpectra formulates structure elucidation as a conditional generation process. Its denoising network is parameterized by Diffusion Molecule Transformer, an SE(3)-equivariant architecture that integrates topological and geometric information. Conditioning is provided by SpecFormer, a transformer-based spectral encoder that captures intra- and inter-spectral dependencies from multi-modal spectra. Extensive experiments demonstrate that DiffSpectra achieves high accuracy in structure elucidation, recovering exact structures with 16.01% top-1 accuracy and 96.86% top-20 accuracy through sampling. The model benefits significantly from 3D geometric modeling, SpecFormer pre-training, and multi-modal conditioning. These results highlight the effectiveness of spectrum-conditioned diffusion modeling in addressing the challenge of molecular structure elucidation. To our knowledge, DiffSpectra is the first framework to unify multi-modal spectral reasoning and joint 2D/3D generative modeling for de novo molecular structure elucidation.

We present subarcsecond-resolution ALMA mosaics of the Orion Bar PDR in [CI] 609 um, C2H (4-3), and C18O (3-2) emission lines, complemented by JWST images of H2 and aromatic infrared band (AIB) emission. The rim of the Bar shows very corrugated structures made of small-scale H2 dissociation fronts (DFs). The [CI] 609 um emission peaks very close (~0.002 pc) to the main H2-emitting DFs, suggesting the presence of gas density gradients. These DFs are also bright and remarkably similar in C2H emission, which traces 'hydrocarbon radical peaks' characterized by very high C2H abundances, reaching up to several x10^-7. The high abundance of C2H and of related hydrocarbon radicals, such as CH3, CH2, and CH, can be attributed to gas-phase reactions driven by elevated temperatures, the presence of C+ and C, and the reactivity of FUV-pumped H2. The hydrocarbon radical peaks roughly coincide with maxima of the 3.4/3.3 um AIB intensity ratio, a proxy for the aliphatic-to-aromatic content of PAHs. This implies that the conditions triggering the formation of simple hydrocarbons also favor the formation (and survival) of PAHs with aliphatic side groups, potentially via the contribution of bottom-up processes in which abundant hydrocarbon radicals react in situ with PAHs. Ahead of the DFs, in the atomic PDR zone (where [H]>>[H2]), the AIB emission is brightest, but small PAHs and carbonaceous grains undergo photo-processing due to the stronger FUV field. Our detection of trace amounts of C2H in this zone may result from the photoerosion of these species. This study provides a spatially resolved view of the chemical stratification of key carbon carriers in a PDR. Overall, both bottom-up and top-down processes appear to link simple hydrocarbon molecules with PAHs in molecular clouds; however, the exact chemical pathways and their relative contributions remain to be quantified.

Accurately modeling chemical reactions at the atomistic level requires high-level electronic structure theory due to the presence of unpaired electrons and the need to properly describe bond breaking and making energetics. Commonly used approaches such as Density Functional Theory (DFT) frequently fail for this task due to deficiencies that are well recognized. However, for high-fidelity approaches, creating large datasets of energies and forces for reactive processes to train machine learning interatomic potentials or force fields is daunting. For example, the use of the unrestricted coupled cluster level of theory has previously been seen as unfeasible due to high computational costs, the lack of analytical gradients in many computational codes, and additional challenges such as constructing suitable basis set corrections for forces. In this work, we develop new methods and workflows to overcome the challenges inherent to automating unrestricted coupled cluster calculations. Using these advancements, we create a dataset of gas-phase reactions containing energies and forces for 3119 different organic molecules configurations calculated at the gold-standard level of unrestricted CCSD(T) (coupled cluster singles doubles and perturbative triples). With this dataset, we provide an analysis of the differences between the density functional and unrestricted CCSD(T) descriptions. We develop a transferable machine learning interatomic potential for gas-phase reactions, trained on unrestricted CCSD(T) data, and demonstrate the advantages of transitioning away from DFT data. Transitioning from training to DFT to training to UCCSD(T) datasets yields an improvement of more than 0.1 eV/Å in force accuracy and over 0.1 eV in activation energy reproduction.

Local molecular orientation and conformation within nanostructures is central to their behavior in devices, emergent quantum states, and biological processes. X-ray microscopy and scattering at the carbon absorption edge is uniquely sensitive to these phenomena, through transition dipole moments encoded with photon energy and polarization. However, quantitative analysis is precluded due to the lack of accurate optical models with bond and orientation specificity. We generate such a model through an unsupervised machine learning algorithm that clusters density functional theory calculations into principle electronic transitions, quantitatively refined with angle-resolved absorbance measurements. The resulting optical tensor reproduces data from samples with domains of different orientation and crystalline packing. This refinement method connects spectral features to chemical moieties and resolves measurement-inaccessible dipole moments, establishing a new paradigm for label-free orientation analyses of bonds within molecular nanostructures.

Machine-learned interatomic potentials trained across the periodic table have made atomistic simulation broadly accessible, and specializing them to a single compound class is widely expected to improve accuracy. Yet examples remain scarce, and fewer still surpass universal models in speed or reach a higher level of electronic-structure theory. Here we present a potential that is universal within the class of water-free solid-state hydrogen-bond network mediated proton conductors rather than across chemistry and a database of 4.4 million first-principles configurations spanning 55 materials. It surpasses leading general-purpose potentials across this domain, recovering measured activation energies and the ordering of anion rotational dynamics that those models miss; agreement on static structure does not imply agreement on transport. Accuracy falls for compositions far from the training set but stays competitive for close structural relatives, and a higher level of electronic-structure theory is reached with a few hundred additional configurations per material. We further introduce a compact variant carrying a fifth of the parameters, faster still and yet more accurate than every general-purpose model tested. It sustains more than a quarter of a million atoms on a single graphics processor, placing grain boundaries and the transition into the highly conducting phase within reach, and making a quantum treatment of the protons affordable. Reference accuracy and accessible system size thus become largely independent, offering a template for other compound classes.

The structure-function relationship is at the heart of biology and major protein deformations are correlated to specific functions. In the case of heme proteins, doming is associated with the respiratory function in hemoglobin and myoglobin, while ruffling has been correlated with electron transfer processes, such as in the case of Cytochrome c (Cyt c). The latter has indeed evolved to become an important electron transfer protein in humans. In its ferrous form, it undergoes ligand release and doming upon photoexcitation, but its ferric form does not release the distal ligand, while the return to the ground state has been attributed to thermal relaxation. Here, by combining femtosecond Fe K-edge X-ray absorption near-edge structure (XANES) studies and femtosecond Fe Kalpha and Kbeta X-ray emission spectroscopy (XES), we demonstrate that the photocycle of ferric Cyt c is entirely due to a cascade among excited spin states of the Iron ion, causing the ferric heme to undergo doming, which we identify for the first time. We also argue that this pattern is common to all ferric haems, raising the question of the biological relevance of doming in such proteins.

Excited electronic states are difficult to accurately and tractably model, particularly those exhibiting multiexcitonic character. Scalable single-reference excited state methods typically fail to describe such states as they suffer from the defects of the mean-field approximation and/or neglect higher-rank excitation operators. To address this, we derive the [T] perturbative correction to the quantum self-consistent equation-of-motion unitary coupled cluster singles and doubles (q-sc-EOM-UCCSD) method. The method captures triple excitation effects through a classical step of second-order in many-body perturbation theory following a q-sc-EOM-UCCSD calculation on a quantum computer. The perturbative correction developed has a O(N^7) classical computational time scaling. We incorporate [T] into a hybrid compute strategy wherein eigenvectors of the effective Hamiltonian from the hybrid quantum-classical q-sc-EOM-UCCSD algorithm are relayed to a classical computer which performs the postprocessing required for the [T] correction. The benefits of [T] are quantified in a benchmark covering a variety of electronically excited states of the isoelectronic CH^+ and BH molecules. We find that the addition of the [T] correction to both trotterized and full operator variants of q-sc-EOM-CCSD can offer dramatic improvements over baseline q-sc-EOM-UCCSD. Our assessment clearly demonstrates the importance of considering higher-rank excitation operators in q-sc-EOM-UCCSD, quantifies the overall success of the [T] correction, and discusses some of its limitations.

We pursue the development and application of the recently-introduced linear optimization method for determining the optimal linear and nonlinear parameters of Jastrow-Slater wave functions in a variational Monte Carlo framework. In this approach, the optimal parameters are found iteratively by diagonalizing the Hamiltonian matrix in the space spanned by the wave function and its first-order derivatives, making use of a strong zero-variance principle. We extend the method to optimize the exponents of the basis functions, simultaneously with all the other parameters, namely the Jastrow, configuration state function and orbital parameters. We show that the linear optimization method can be thought of as a so-called augmented Hessian approach, which helps explain the robustness of the method and permits us to extend it to minimize a linear combination of the energy and the energy variance. We apply the linear optimization method to obtain the complete ground-state potential energy curve of the C_2 molecule up to the dissociation limit, and discuss size consistency and broken spin-symmetry issues in quantum Monte Carlo calculations. We perform calculations of the first-row atoms and homonuclear diatomic molecules with fully optimized Jastrow-Slater wave functions, and we demonstrate that molecular well depths can be obtained with near chemical accuracy quite systematically at the diffusion Monte Carlo level for these systems.

Density functional theory (DFT), the most widely adopted method in modern computational chemistry, fails to describe accurately the electronic structure of strongly correlated systems. Here we show that DFT can be formally and practically transformed into a one-electron reduced-density-matrix (1-RDM) functional theory, which can address the limitations of DFT while retaining favorable computational scaling compared to wavefunction-based approaches. In addition to relaxing the idempotency restriction on the 1-RDM in the kinetic energy term, we add a quadratic 1-RDM-based term to DFT's density-based exchange-correlation functional. Our approach, which we implement by quadratic semidefinite programming at DFT's computational scaling of O(r^{3}), yields substantial improvements over traditional DFT in the description of static correlation in chemical structures and processes such as singlet biradicals and bond dissociations.

The orbital, spin and valley degrees of freedom in silicon quantum dots support many modes of spin qubit operation. However, it is generally challenging to obtain information about the energy level spectrum over large ranges of parameter space. We demonstrate a form of spectroscopy that is capable of mapping the energy level structure of a double quantum dot as a function of level detuning, interdot tunnel coupling, and magnetic field. In the one electron regime, we directly observe the transition from the atom like energy levels of isolated quantum dots to molecular like bonding and anti bonding states with increasing interdot tunnel coupling. We also resolve the Zeeman splitting of ground and excited valley states in a magnetic field. In the two electron regime, we gain access to the detuning dependent singlet triplet splitting. Our work may be extended to a broader class of systems, such as strong spin-orbit materials or proximitized quantum dots, allowing the direct extraction of various energy gaps.

Inverse design of inorganic crystals, in which structures are generated to satisfy a target property while preserving diversity and physical plausibility, remains more demanding than ab initio generation, as property conditioning can degrade the structural quality that current generative models otherwise achieve. We propose a diffusion framework that jointly denoises crystal-structure variables and site-resolved local electronic descriptors through a shared score network. As representative descriptors, we adopt Bader charge and atomic density of states (atomic DOS). Under both band-gap and formation energy conditioned generation, the joint models achieved higher success rates than the structure-only baseline in most target conditions, while simultaneously increasing the fraction of generated structures that satisfy uniqueness, novelty, thermodynamic stability, and physical validity (VSUN criteria). A dummy-variable control confirms that these gains originate from the electronic content of the descriptors rather than from auxiliary site-wise variables. The generated Bader charges agree with DFT references with an MAE of 5.5e-2 e on stable structures, and the generated atomic DOS captures the coarse spectral profile of the DFT reference around the modal accuracy range, although finer details and accuracy vary with elemental species. These results establish local electronic descriptors as effective generative variables that serve two complementary roles: broadening the explored materials space through increased structural diversity, and mitigating the trade-off between property targeting and structural quality by guiding the structural trajectory toward electronically plausible configurations during joint denoising.

Artificial intelligence models have shown great potential in structure-based drug design, generating ligands with high binding affinities. However, existing models have often overlooked a crucial physical constraint: atoms must maintain a minimum pairwise distance to avoid separation violation, a phenomenon governed by the balance of attractive and repulsive forces. To mitigate such separation violations, we propose NucleusDiff. It models the interactions between atomic nuclei and their surrounding electron clouds by enforcing the distance constraint between the nuclei and manifolds. We quantitatively evaluate NucleusDiff using the CrossDocked2020 dataset and a COVID-19 therapeutic target, demonstrating that NucleusDiff reduces violation rate by up to 100.00% and enhances binding affinity by up to 22.16%, surpassing state-of-the-art models for structure-based drug design. We also provide qualitative analysis through manifold sampling, visually confirming the effectiveness of NucleusDiff in reducing separation violations and improving binding affinities.

The Mpemba effect is a thermodynamic anomaly in which a system farther away in temperature from equilibrium thermalizes before one that is initially closer. The effect has been experimentally observed across a wide range of systems, including water, colloids, and trapped ions. It has recently been the focus of numerous studies aimed at understanding its mechanisms and developing multiple applications. Despite extensive work in the field, clearly determining which types of systems exhibit the Mpemba effect remains an open question. To address this, we derive simple necessary conditions on the transition rates for the Mpemba effect in a Markovian 3-level system and show that they can be applied to study the Mpemba effect in an N-level system. Multiple time scales govern thermalization in these systems. This allows the evolution to occur more quickly across larger temperature differences, explaining the Mpemba effect. We apply our protocol to evaluate which types of systems exhibit the Mpemba effect and, in doing so, explain why the Mpemba effect in Markovian systems remains a thermodynamic anomaly. In particular, due to the maximum entropy principle, our conditions allow us to discard the sub-Ohmic and Ohmic spectra. The latter describes a wide range of physical and chemical phenomena, which will not exhibit the Mpemba effect. Moreover, our results provide a clear path to determine the minimal physical requirements for the Mpemba effect, and we apply them to understand its underlying mechanisms better. Finally, our protocol could help identify relevant parameters for experiments, numerical simulations and diverse applications.

Energy extrapolation is a well-established strategy for approaching quantum-chemical limits without performing prohibitively expensive calculations. Complete basis set extrapolation is widely used, whereas extrapolation across electronic structure methods remains much less developed. Method-Space Effective-Rank Correlation Energy Extrapolation (MERCE) is introduced as an adaptive effective-rank framework for estimating high-rank finite-basis correlation energies from second-order Moller-Plesset perturbation theory (MP2), coupled cluster with single and double excitations (CCSD), and CCSD with perturbative triples [CCSD(T)]. The method assigns adaptive effective ranks to MP2 and CCSD(T) from the local MP2-CCSD-CCSD(T) correlation energy pattern and fits a compact three-point extrapolation form for each system. A hierarchical model-selection protocol balances cross-dataset transferability, maximum dataset-level mean absolute error (MAE) ratios, robustness on developmental sets referenced to full configuration interaction (FCI), size-consistency defects, and performance for A24 noncovalent interaction energies. Across the chemically diverse benchmarks used during model development, the selected MERCE model substantially reduces CCSD(T) errors and frequently improves upon the tested higher-rank coupled cluster baselines. Transferability is further assessed using calculations performed only after the functional form and parameters were frozen. Formal nonadditivity is quantified using artificial noninteracting pairs and the actual A24 and selected S66 component calculations.